[Gmod-gbrowse] help regarding gbrowse

[Scott Cain]

Hi Umay,

Please always ask questions like this on the GBrowse mailing list (cc'ed
here).

Do you have apache installed and running? What is in the apache error log
(probably in /var/log/apache2/error_log)?

Scott

hello Scott,
sudo perl -MCPAN -e 'install Bio::Graphics::Browser2'
but the example file of yeast not working with the url
http://localhost/gbrowse2/yeast
it shows the error the rquested url was not found on this server.
/usr/lib/cgi-bin/gb2/gbrowse
/etc/gbrowse2/GBrowse.conf
but nothing is found in /var/tmp/gbrowse2
Can you please help in solving this.
Regards
Umay Kulsum
PhD Student
AIIMS

[Scott Cain]

Hi Umay,

The email address is gmod-***@lists.sourceforge.net, and you get a
moderation message because you have to be subscribed to the list in order
to send messages to it without moderation. I have always allowed your
messages onto the list; the moderation is to keep spammers out.

A few things:

1. The url you are trying (http://localhost/gbrowse2/yeast) won't get you a
GBrowse page unless you've done something unusual with your apache config.
A more typical URL would be http://localhost/cgi-bin/gb2/gbrowse/yeast

2. What OS are you using? The apache error log segment makes me think
Centos or Fedora but the path to the cgi you originally posted makes me
think Debian or Ubuntu.

3. While you weren't using the correct URL to access GBrowse, the file
permissions error in the error log has me worried that something went wrong
during the installation, as it should set the permissions correctly. Do
you recall any messages about problems during the installation?

Scott

Dear Scott
Your message to Gmod-gbrowse awaits moderator approval
Yes I have apache installed and running and the error log shows
"Permission denied: [client 127.0.0.1:46351] AH00132: file permissions
http://localhost/gbrowse/" when I try http://localhost/gbrowse2/yeast.
Regards
Umay Kulsum
PhD student
AIIMS

Post by Scott Cain
Hi Umay,
Please always ask questions like this on the GBrowse mailing list (cc'ed
here).
Do you have apache installed and running? What is in the apache error

log

Post by Scott Cain
(probably in /var/log/apache2/error_log)?
Scott

hello Scott,
sudo perl -MCPAN -e 'install Bio::Graphics::Browser2'
but the example file of yeast not working with the url
http://localhost/gbrowse2/yeast
it shows the error the rquested url was not found on this server.
/usr/lib/cgi-bin/gb2/gbrowse
/etc/gbrowse2/GBrowse.conf
but nothing is found in /var/tmp/gbrowse2
Can you please help in solving this.
Regards
Umay Kulsum
PhD Student
AIIMS

--
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Scott Cain, Ph. D. scott at scottcain

dot

Post by Scott Cain
net
GMOD Coordinator (http://gmod.org/) 216-392-3087
Ontario Institute for Cancer Research