Vladimir Gritsenko
2015-02-25 16:28:33 UTC
Hello all,
I’m having a problem with an FFF file. It defines an xyplot histogram, and includes multiple sequence IDs. However, GBrowse 2.49 (as deployed on CGD) files all features under the first sequence ID it encounters, and ignored the rest.
This leads to me another question. Is there a “canonical" version of GBrowse against which potential bugs can be tested?
The test data is:
[CNV]
glyph = xyplot
graph_type=histogram
fgcolor = black
bgcolor = black
height=50
min_score=0
max_score=4
label=1
key=CNV histogram
CNV " " Ca21chr1_C_albicans_SC5314:1..5000 score=4
CNV " " Ca21chr2_C_albicans_SC5314:1..5000 score=3
I’m having a problem with an FFF file. It defines an xyplot histogram, and includes multiple sequence IDs. However, GBrowse 2.49 (as deployed on CGD) files all features under the first sequence ID it encounters, and ignored the rest.
This leads to me another question. Is there a “canonical" version of GBrowse against which potential bugs can be tested?
The test data is:
[CNV]
glyph = xyplot
graph_type=histogram
fgcolor = black
bgcolor = black
height=50
min_score=0
max_score=4
label=1
key=CNV histogram
CNV " " Ca21chr1_C_albicans_SC5314:1..5000 score=4
CNV " " Ca21chr2_C_albicans_SC5314:1..5000 score=3