[Gmod-gbrowse] cannot set admin password

[Oliver Pelz]

Hi!

I am just installed GBrowse and run into trouble:

* Using centos 6.5
* building perl v.5.18.1
* installed latest cpan, bioperl and gbrowse using cpan:
* as of 14/10/14: CPAN 2.05, BioPerl-1.6.923., GBrowse-2.55

right after installation first thing I did without touching anything (not
GBrowse.conf etc. ):

sudo -uapache ./gbrowse_set_admin_passwd.pl

gives me:

Use of uninitialized value in warn at
/usr/local/lib64/perl5/Bio/Graphics/Browser2/Session.pm line 153, <STDIN>
line 2.
[20194] session lock timed out on request after 50.000s
: http://localhost at
/usr/local/lib64/perl5/Bio/Graphics/Browser2/Session.pm line 153, <STDIN>
line 2.
No SMTP server found in globals at
/usr/local/lib64/perl5/Bio/Graphics/Browser2/SendMail.pm line 29, <STDIN>
line 2.
No SMTP server found in globals at
/usr/local/lib64/perl5/Bio/Graphics/Browser2/SendMail.pm line 29, <STDIN>
line 2.
Mail Error

Am I missing something?
If I manually increase the lock time in Session.pm I get the same result.

Best,
Oliver Pelz

[Scott Cain]

Hi Oliver,

I'm going to set about trying to reproduce the problem, but in the
meantime, I just wanted to make sure you need it: most people use GBrowse
without ever setting the admin password; do you want the functionality
associated with it like user accounts?

Scott

Post by Oliver Pelz
Hi!
* Using centos 6.5
* building perl v.5.18.1
* as of 14/10/14: CPAN 2.05, BioPerl-1.6.923., GBrowse-2.55
right after installation first thing I did without touching anything (not
sudo -uapache ./gbrowse_set_admin_passwd.pl
Use of uninitialized value in warn at
/usr/local/lib64/perl5/Bio/Graphics/Browser2/Session.pm line 153, <STDIN>
line 2.
[20194] session lock timed out on request after 50.000s
: http://localhost at
/usr/local/lib64/perl5/Bio/Graphics/Browser2/Session.pm line 153, <STDIN>
line 2.
No SMTP server found in globals at
/usr/local/lib64/perl5/Bio/Graphics/Browser2/SendMail.pm line 29, <STDIN>
line 2.
No SMTP server found in globals at
/usr/local/lib64/perl5/Bio/Graphics/Browser2/SendMail.pm line 29, <STDIN>
line 2.
Mail Error
Am I missing something?
If I manually increase the lock time in Session.pm I get the same result.
Best,
Oliver Pelz
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[Scott Cain]

Replying on list so that this gets archived: Oliver told me that setting:

session lock type = nfs

fixed this issue.

Post by Scott Cain
Hi Oliver,
I'm going to set about trying to reproduce the problem, but in the
meantime, I just wanted to make sure you need it: most people use GBrowse
without ever setting the admin password; do you want the functionality
associated with it like user accounts?
Scott

Post by Oliver Pelz
Hi!
* Using centos 6.5
* building perl v.5.18.1
* as of 14/10/14: CPAN 2.05, BioPerl-1.6.923., GBrowse-2.55
right after installation first thing I did without touching anything (not
sudo -uapache ./gbrowse_set_admin_passwd.pl
Use of uninitialized value in warn at
/usr/local/lib64/perl5/Bio/Graphics/Browser2/Session.pm line 153, <STDIN>
line 2.
[20194] session lock timed out on request after 50.000s
: http://localhost at
/usr/local/lib64/perl5/Bio/Graphics/Browser2/Session.pm line 153, <STDIN>
line 2.
No SMTP server found in globals at
/usr/local/lib64/perl5/Bio/Graphics/Browser2/SendMail.pm line 29, <STDIN>
line 2.
No SMTP server found in globals at
/usr/local/lib64/perl5/Bio/Graphics/Browser2/SendMail.pm line 29, <STDIN>
line 2.
Mail Error
Am I missing something?
If I manually increase the lock time in Session.pm I get the same result.
Best,
Oliver Pelz
------------------------------------------------------------------------------
Comprehensive Server Monitoring with Site24x7.
Monitor 10 servers for $9/Month.
Get alerted through email, SMS, voice calls or mobile push notifications.
Take corrective actions from your mobile device.
http://p.sf.net/sfu/Zoho
_______________________________________________
Gmod-gbrowse mailing list
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse

--
------------------------------------------------------------------------
Scott Cain, Ph. D. scott at scottcain
dot net
GMOD Coordinator (http://gmod.org/) 216-392-3087
Ontario Institute for Cancer Research