Discussion:
[Gmod-gbrowse] Two organism in a GBrowse installed system
rayapadi swetha
2014-05-12 12:49:22 UTC
Permalink
Dear sir,

I have a doubt.

I am working on two different bacterial organisms. I am successful in
creating a database and using Gbrowse for a organism. But I want to use the
same Gbrowse for the second organism database. But with different data
source. Is it possible? if so, please send me the steps how to do.

For example:

In Gbrowse data source, I have following strains for first organism

x
y
z

Suppose, if i switched over the second organism database, the Gbrowse data
source should have

a
b
c

How to do this sir?

-Swetha R G.
Scott Cain
2014-05-12 14:24:38 UTC
Permalink
Hi Swetha,

To provide users a second organism, all you have to do is create a second
configuration file that uses the second data source. You may have noticed
that with GBrowse as it is installed by default, there are multiple
different configuration files (two separate yeasts, a tutorial file if
you've done the tutorial, a population display demo and a renderfarm demo):
you just have to do the same thing for your data.

Please let us know if this doesn't make sense to you.

Scott



On Mon, May 12, 2014 at 8:49 AM, rayapadi swetha
Post by rayapadi swetha
Dear sir,
I have a doubt.
I am working on two different bacterial organisms. I am successful in
creating a database and using Gbrowse for a organism. But I want to use the
same Gbrowse for the second organism database. But with different data
source. Is it possible? if so, please send me the steps how to do.
In Gbrowse data source, I have following strains for first organism
x
y
z
Suppose, if i switched over the second organism database, the Gbrowse data
source should have
a
b
c
How to do this sir?
-Swetha R G.
--
------------------------------------------------------------------------
Scott Cain, Ph. D. scott at scottcain dot
net
GMOD Coordinator (http://gmod.org/) 216-392-3087
Ontario Institute for Cancer Research
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