Changfa Yin
2016-10-11 00:51:49 UTC
Hi there,
I am installing GBrowse2. on CentOS6.4 with <perl -MCPAN -e 'install Bio::Graphics::Browser2'>.
After that, the wellcome page (http://10.2.40.95/gbrowse2/) is ok.
But http://10.2.40.95/cgi-bin/gb2/gbrowse/yeast/ and the volvox tutorail exported an "Internal Server Error".
What's wrong with my GBrowse2?
The /var/log/httpd/error_log recorded the error:
[Mon Oct 10 09:40:01 2016] [error] [client 10.2.40.107] CGI::param called in list context from /usr/local/lib/perl5/site_perl/5.10.1/x86_64-linux/Bio/Graphics/Browser2/Render.pm line 69, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/local/lib/perl5/5.10.1/CGI.pm line 412.
[Mon Oct 10 09:40:01 2016] [error] [client 10.2.40.107] DBD::SQLite::db selectrow_array failed: no such table: session at /usr/local/lib/perl5/site_perl/5.10.1/x86_64-linux/Bio/Graphics/Browser2/UserDB.pm line 406.
[Mon Oct 10 09:40:01 2016] [error] [client 10.2.40.107] DBD::SQLite::db selectrow_array failed: no such table: session at /usr/local/lib/perl5/site_perl/5.10.1/x86_64-linux/Bio/Graphics/Browser2/UserDB.pm line 447.
[Mon Oct 10 09:40:01 2016] [error] [client 10.2.40.107] DBD::SQLite::db selectcol_arrayref failed: no such table: uploads at /usr/local/lib/perl5/site_perl/5.10.1/x86_64-linux/Bio/Graphics/Browser2/UserTracks/Database.pm line 112.
[Mon Oct 10 09:40:01 2016] [error] [client 10.2.40.107] Can't use an undefined value as an ARRAY reference at /usr/local/lib/perl5/site_perl/5.10.1/x86_64-linux/Bio/Graphics/Browser2/UserTracks/Database.pm line 113.
[Mon Oct 10 09:40:01 2016] [error] [client 10.2.40.107] Premature end of script headers: gbrowse
Thank you.
I am installing GBrowse2. on CentOS6.4 with <perl -MCPAN -e 'install Bio::Graphics::Browser2'>.
After that, the wellcome page (http://10.2.40.95/gbrowse2/) is ok.
But http://10.2.40.95/cgi-bin/gb2/gbrowse/yeast/ and the volvox tutorail exported an "Internal Server Error".
What's wrong with my GBrowse2?
The /var/log/httpd/error_log recorded the error:
[Mon Oct 10 09:40:01 2016] [error] [client 10.2.40.107] CGI::param called in list context from /usr/local/lib/perl5/site_perl/5.10.1/x86_64-linux/Bio/Graphics/Browser2/Render.pm line 69, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/local/lib/perl5/5.10.1/CGI.pm line 412.
[Mon Oct 10 09:40:01 2016] [error] [client 10.2.40.107] DBD::SQLite::db selectrow_array failed: no such table: session at /usr/local/lib/perl5/site_perl/5.10.1/x86_64-linux/Bio/Graphics/Browser2/UserDB.pm line 406.
[Mon Oct 10 09:40:01 2016] [error] [client 10.2.40.107] DBD::SQLite::db selectrow_array failed: no such table: session at /usr/local/lib/perl5/site_perl/5.10.1/x86_64-linux/Bio/Graphics/Browser2/UserDB.pm line 447.
[Mon Oct 10 09:40:01 2016] [error] [client 10.2.40.107] DBD::SQLite::db selectcol_arrayref failed: no such table: uploads at /usr/local/lib/perl5/site_perl/5.10.1/x86_64-linux/Bio/Graphics/Browser2/UserTracks/Database.pm line 112.
[Mon Oct 10 09:40:01 2016] [error] [client 10.2.40.107] Can't use an undefined value as an ARRAY reference at /usr/local/lib/perl5/site_perl/5.10.1/x86_64-linux/Bio/Graphics/Browser2/UserTracks/Database.pm line 113.
[Mon Oct 10 09:40:01 2016] [error] [client 10.2.40.107] Premature end of script headers: gbrowse
Thank you.