[Gmod-gbrowse] TrackDumper: not working

[Samy Jeevan Karloss Antony]

Hei,

I am using Bio::DB::SeqFeature::Store and DBI:mysql adapter for our GBrowse installation.

I used “bp_seqfeature_load.pl” to load gff3 file.

Now my trackdumer is not working. It was working before when I used Chado+Postgres.

It throws the errors below.


Fri May 16 10:57:58 2014] [error] [client 128.39.181.16] MSG: segment() called in a scalar context but multiple features match., referer:
[Fri May 16 10:57:58 2014] [error] [client 128.39.181.16] Either call in a list context or narrow your search using the -types or -class arguments, referer: http://128.39.181.180/cgi-bin/gb2/gbrowse/salmon_GBrowse/
[Fri May 16 10:57:58 2014] [error] [client 128.39.181.16] , referer: http://128.39.181.180/cgi-bin/gb2/gbrowse/xxx_GBrowse/
[Fri May 16 10:57:58 2014] [error] [client 128.39.181.16] STACK Bio::DB::SeqFeature::Store::segment /usr/local/share/perl5/Bio/DB/SeqFeature/Store.pm:1359, referer: http://128.39.181.180/cgi-bin/gb2/gbrowse/xxxx_GBrowse/
[Fri May 16 10:57:58 2014] [error] [client 128.39.181.16] STACK Bio::Graphics::Browser2::Plugin::TrackDumper::dump /etc/gbrowse2/plugins/TrackDumper.pm:132, referer: http://128.39.181.180/cgi-bin/gb2/gbrowse/xxxx_GBrowse/
[Fri May 16 10:57:58 2014] [error] [client 128.39.181.16] STACK Bio::Graphics::Browser2::Render::do_plugin_dump /usr/local/lib64/perl5/Bio/Graphics/Browser2/Render.pm:1573, referer: http://128.39.181.180/cgi-bin/gb2/gbrowse/xxxx_GBrowse/
[Fri May 16 10:57:58 2014] [error] [client 128.39.181.16] STACK Bio::Graphics::Browser2::Render::handle_plugins /usr/local/lib64/perl5/Bio/Graphics/Browser2/Render.pm:1546, referer: http://128.39.181.180/cgi-bin/gb2/gbrowse/xxxx_GBrowse/
[Fri May 16 10:57:58 2014] [error] [client 128.39.181.16] STACK Bio::Graphics::Browser2::Render::render /usr/local/lib64/perl5/Bio/Graphics/Browser2/Render.pm:744, referer: http://128.39.181.180/cgi-bin/gb2/gbrowse/xxxx_GBrowse/
[Fri May 16 10:57:58 2014] [error] [client 128.39.181.16] STACK Bio::Graphics::Browser2::Render::run /usr/local/lib64/perl5/Bio/Graphics/Browser2/Render.pm:298, referer: http://128.39.181.180/cgi-bin/gb2/gbrowse/xxxx_GBrowse/
[Fri May 16 10:57:58 2014] [error] [client 128.39.181.16] STACK toplevel /var/www/cgi-bin/gb2/gbrowse:54, referer: http://128.39.181.180/cgi-bin/gb2/gbrowse/xxxx_GBrowse/
[Fri May 16 10:57:58 2014] [error] [client 128.39.181.16] -------------------------------------------, referer: http://128.39.181.180/cgi-bin/gb2/gbrowse/xxxx_GBrowse/

Thanks,
Jeevan