Discussion:
[Gmod-gbrowse] Gbrowse_syn sequence name
LE CAVORZIN Arnaud
2015-11-17 11:06:33 UTC
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I'm trying to load an alignment file into a mysql database, like describe in the tutorial.

My alignment file looks like :

CLUSTAL W(1.81) multiple sequence alignment W(1.81)
SpA-1(+)/1..231239 --------------------------------------------------
SpB-1(+)/1..231239 CCACACCACACCCACACACCCACACACCACACCACACACCACACCACACC

SpA-1(+)/1..231239 --------------------------------------------------
SpB-1(+)/1..231239 CACACACACACATCCTAACACTACCCTAACACAGCCCTAATCTAACCCTG


When using gbrowse_syn_load_alignments_msa.pl I have an error saying "I do not like the sequence name". I have tried to change the name, but even if I used the same name as the tutorial I have the same error.
What I could do to import these data?


Thank you for your answer,


Best regards



Arnaud

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