LE CAVORZIN Arnaud
2015-11-17 11:06:33 UTC
I'm trying to load an alignment file into a mysql database, like describe in the tutorial.
My alignment file looks like :
CLUSTAL W(1.81) multiple sequence alignment W(1.81)
SpA-1(+)/1..231239 --------------------------------------------------
SpB-1(+)/1..231239 CCACACCACACCCACACACCCACACACCACACCACACACCACACCACACC
SpA-1(+)/1..231239 --------------------------------------------------
SpB-1(+)/1..231239 CACACACACACATCCTAACACTACCCTAACACAGCCCTAATCTAACCCTG
When using gbrowse_syn_load_alignments_msa.pl I have an error saying "I do not like the sequence name". I have tried to change the name, but even if I used the same name as the tutorial I have the same error.
What I could do to import these data?
Thank you for your answer,
Best regards
Arnaud
My alignment file looks like :
CLUSTAL W(1.81) multiple sequence alignment W(1.81)
SpA-1(+)/1..231239 --------------------------------------------------
SpB-1(+)/1..231239 CCACACCACACCCACACACCCACACACCACACCACACACCACACCACACC
SpA-1(+)/1..231239 --------------------------------------------------
SpB-1(+)/1..231239 CACACACACACATCCTAACACTACCCTAACACAGCCCTAATCTAACCCTG
When using gbrowse_syn_load_alignments_msa.pl I have an error saying "I do not like the sequence name". I have tried to change the name, but even if I used the same name as the tutorial I have the same error.
What I could do to import these data?
Thank you for your answer,
Best regards
Arnaud