[Gmod-gbrowse] Fwd: SNPs by accession track

[v singh]

Dear All,

I want to upload a track with 250+ subtracks for displaying SNPs in samples
, called ‘SNPs by accession’ track. I generated a gff for the same looking
like this —


### gff-version 3

### source VCF file -->Example.vcf

Ca1 Example.vcf SNP 32031 32031 . + . acgt=0 0 1 0;ref=C;
line=Karab_062A;Name=cicar.line.kphxhfd

Ca1 Example.vcf SNP 32031 32031 . + . acgt=0 0 1 0;ref=C;
line=Karab_062A_x_96029_02;Name=cicar.line.eq315e0

Ca1 Example.vcf SNP 32031 32031 . + . acgt=0 0 1 0;ref=C;
line=Karab_062A_x_96029_03;Name=cicar.line.my4unk7

Ca1 Example.vcf SNP 32031 32031 . + . acgt=0 0 1 0;ref=C;
line=Karab_062A_x_96029_16;Name=cicar.line.5wtysew

Ca1 Example.vcf SNP 32031 32031 . + . acgt=0 0 1 0;ref=C;
line=Karab_062A_x_96029_23;Name=cicar.line.1jsnidx

Ca1 Example.vcf SNP 32031 32031 . + . acgt=0 0 2 0;ref=C;
line=S2Drd_107B;Name=cicar.line.6ley7td


Here’s what I used in the config file —


[SNPbyAcc]

database = snplines

feature = SNP

glyph = triangle

point = 1

orient = N

height = 5

label = 1

bgcolor = blue

subtrack select = Line tag_value line ;

subtrack table = 96029;

Bari1_092;

Bari1_092_x_96029_01;

Bari1_092_x_96029_02;

Bari1_092_x_96029_03;

Bari1_092_x_96029_05;

Bari1_092_x_96029_07;

Bari1_092_x_96029_08;

Bari1_092_x_96029_09;



This track loads alright without the subtrack select option. once I choose
the subtrack select option
 essentially no data is displayed .. please see
attached pdf . It will be a great help, if you can help diagnose what I’m
doing wrong here.

Many Thanks,
Vasantika