unknown
1970-01-01 00:00:00 UTC
<div><font color=3D"#000000" face=3D"sans-serif"><span style=3D"background-=
color:rgba(240,240,240,0.4)"><br></span></font></div><div><font color=3D"#0=
00000" face=3D"sans-serif"><span style=3D"background-color:rgba(240,240,240=
,0.4)">On your web site, compare:</span></font></div>
<div><font color=3D"#000000" face=3D"sans-serif"><span style=3D"background-=
color:rgba(240,240,240,0.4)"><a href=3D"http://182.162.88.52/cgi-bin/gb2/gb=
rowse_syn/test_syn/?search_src=3Dgallus;name=3D4:93742817..93742820">http:/=
/182.162.88.52/cgi-bin/gb2/gbrowse_syn/test_syn/?search_src=3Dgallus;name=
=3D4:93742817..93742820</a><br>
</span></font></div><div><font color=3D"#000000" face=3D"sans-serif"><span =
style=3D"background-color:rgba(240,240,240,0.4)">with</span></font></div><d=
iv><span style=3D"color:rgb(0,0,0);font-family:sans-serif;background-color:=
rgba(240,240,240,0.4)"><a href=3D"http://182.162.88.52/cgi-bin/gb2/gbrowse_=
syn/test_syn/?search_src=3Dgallus-4;name=3D4:93742817..93742820">http://182=
.162.88.52/cgi-bin/gb2/gbrowse_syn/test_syn/?search_src=3Dgallus-4;name=3D4=
:93742817..93742820</a></span><font color=3D"#000000" face=3D"sans-serif"><=
span style=3D"background-color:rgba(240,240,240,0.4)"><br>
</span></font></div><div><span style=3D"color:rgb(0,0,0);font-family:sans-s=
erif;background-color:rgba(240,240,240,0.4)"><br></span></div><div><span st=
yle=3D"color:rgb(0,0,0);font-family:sans-serif;background-color:rgba(240,24=
0,240,0.4)"><br>
</span></div><div><font color=3D"#000000" face=3D"courier new, monospace"><=
span style=3D"background-color:rgba(240,240,240,0.4)"><div># =C2=A0 =C2=A0 =
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 name =C2=A0 =C2=A0 =C2=A0 =C2=A0 =
=C2=A0conf. file =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0Description</div>=
<div>source_map =3D =C2=A0 =C2=A0 =C2=A0hg19 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =
=C2=A0hg19_synteny =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0"hg19"</div>
<div>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 gallus =
=C2=A0 =C2=A0 =C2=A0 =C2=A0gallus_synteny =C2=A0 =C2=A0 =C2=A0 =C2=A0"=
gallus-4"</div></span></font></div><div><font color=3D"#000000" face=
=3D"sans-serif"><span style=3D"background-color:rgba(240,240,240,0.4)"><br>=
</span></font></div>
</div><div class=3D"gmail_extra"><br><br><div class=3D"gmail_quote">On Tue,=
Apr 29, 2014 at 9:20 PM, Hyunmin Kim <span dir=3D"ltr"><<a href=3D"mail=
to:***@gmail.com" target=3D"_blank">***@gma=
il.com</a>></span> wrote:<br>
<blockquote class=3D"gmail_quote" style=3D"margin:0 0 0 .8ex;border-left:1p=
x #ccc solid;padding-left:1ex"><div style=3D"word-wrap:break-word">Here is =
my synteny config file.<div><br></div><div>Refer to attached file.</div><di=
v>
<br></div><div></div></div><br><div style=3D"word-wrap:break-word"><div></d=
iv><div><br></div><div>Hyunmin</div><div><br></div><div><div><div>2014. 4. =
29., =EC=98=A4=ED=9B=84 7:51, Sheldon McKay <<a href=3D"mailto:sheldon.m=
***@gmail.com" target=3D"_blank">***@gmail.com</a>> =EC=9E=91=
=EC=84=B1:</div>
<br><blockquote type=3D"cite"><div dir=3D"ltr">Hi Hyunmin,<div><br></div><d=
iv>Would you mind sharing your main configuration file (the one with someth=
ing similar to the text below) so I can try to reproduce your error?</div>
<div>
<br></div><div>Sheldon</div>
<div><br></div><div><br></div># =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =
=C2=A0 =C2=A0 name =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0conf. file =C2=A0 =C2=
=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0Description<br>source_map =3D =C2=A0 =C2=A0 =
rice =C2=A0 =C2=A0 =C2=A0 =C2=A0 rice_synteny =C2=A0 =C2=A0 =C2=A0 =C2=A0 =
=C2=A0"Domesic Rice (O. sativa)"<br>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 wild_rice =
=C2=A0 =C2=A0 wild_rice_synteny =C2=A0 =C2=A0 "Wild Rice"</div>
<div class=3D"gmail_extra"><br><br><div class=3D"gmail_quote">On Tue, Apr 2=
9, 2014 at 2:34 AM, Hyunmin Kim <span dir=3D"ltr"><<a href=3D"mailto:bra=
***@gmail.com" target=3D"_blank">***@gmail.com= </a>></span> wrote:<br>
<blockquote class=3D"gmail_quote" style=3D"margin:0 0 0 .8ex;border-left:1p=
x #ccc solid;padding-left:1ex"><div style=3D"word-wrap:break-word">Hi, All<=
div><br></div><div>I think my finding is bug on GBrowse_syn.</div><div><br>=
</div>
<div>For example, when I set the sample chromosome (scaffold or config..etc=
) name is gallus-4.</div><div>[Genome to search: ] can't be auto select=
ion.</div><div><br></div><div>Maybe it caused by naming ( involve =E2=80=9C=
-=E2=80=9C in chromosome name).</div>
<div><br></div><div>Test URL:</div><div><a href=3D"http://182.162.88.52/cgi=
-bin/gb2/gbrowse_syn/test_syn" target=3D"_blank">http://182.162.88.52/cgi-b=
in/gb2/gbrowse_syn/test_syn</a></div><div><br></div><div>Tutorial (For find=
the bug)</div>
<div>1. Browsing <a href=3D"http://182.162.88.52/cgi-bin/gb2/gbrowse_syn/te=
st_syn" target=3D"_blank">http://182.162.88.52/cgi-bin/gb2/gbrowse_syn/test=
_syn</a> on your web browser.</div><div><br></div><div>2. Click the example=
: [hg19 chr4:159567935..159567940]</div>
<div><br></div><div>3. and Click the another example: [gallus-4 4:93742817.=
.93742820]</div><div><br></div><div>and you=E2=80=99ll get the error messag=
e:</div><div><h2 style=3D"color:red;font-family:sans-serif">Species 'ga=
llus-4' is not configured for this database</h2>
<form method=3D"post" action=3D"http://182.162.88.52/cgi-bin/gb2/gbrowse_sy=
n/test_syn/?search_src=3Dgallus-4;name=3D4:93742817..93742820" enctype=3D"m=
ultipart/form-data" name=3D"145b03873f828a1a_145ac31e2ea811df_searchform" s=
tyle=3D"font-family:sans-serif;font-size:small" target=3D"_blank" onsubmit=
=3D"return window.confirm("You are submitting information to an extern=
al page.\nAre you sure?");">
</form></div><div>so, you must select the [Genome to search: ] to gallus-4<=
/div><div>and you=E2=80=99ll can show the correct result.</div><div><br></d=
iv><div><br></div><div>If you don=E2=80=99t understand my reporting, please=
reply to me.</div>
<div><br></div><div>Thanks,</div><div>Hyunmin</div></div><br>--------------=
----------------------------------------------------------------<br>
"Accelerate Dev Cycles with Automated Cross-Browser Testing - For FREE=
<br>
Instantly run your Selenium tests across 300+ browser/OS combos. =C2=A0Get<=
br>
unparalleled scalability from the best Selenium testing platform available.=
<br>
Simple to use. Nothing to install. Get started now for free."<br>
<a href=3D"http://p.sf.net/sfu/SauceLabs" target=3D"_blank">http://p.sf.net=
/sfu/SauceLabs</a><br>_______________________________________________<br>
Gmod-gbrowse mailing list<br>
<a href=3D"mailto:Gmod-***@lists.sourceforge.net" target=3D"_blank">Gmo=
d-***@lists.sourceforge.net</a><br>
<a href=3D"https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse" targe=
t=3D"_blank">https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse</a><=
br>
<br></blockquote></div><br></div>
</blockquote></div><br></div></div><br></blockquote></div><br></div>
--20cf30223d3d33f5e604f838a385--
color:rgba(240,240,240,0.4)"><br></span></font></div><div><font color=3D"#0=
00000" face=3D"sans-serif"><span style=3D"background-color:rgba(240,240,240=
,0.4)">On your web site, compare:</span></font></div>
<div><font color=3D"#000000" face=3D"sans-serif"><span style=3D"background-=
color:rgba(240,240,240,0.4)"><a href=3D"http://182.162.88.52/cgi-bin/gb2/gb=
rowse_syn/test_syn/?search_src=3Dgallus;name=3D4:93742817..93742820">http:/=
/182.162.88.52/cgi-bin/gb2/gbrowse_syn/test_syn/?search_src=3Dgallus;name=
=3D4:93742817..93742820</a><br>
</span></font></div><div><font color=3D"#000000" face=3D"sans-serif"><span =
style=3D"background-color:rgba(240,240,240,0.4)">with</span></font></div><d=
iv><span style=3D"color:rgb(0,0,0);font-family:sans-serif;background-color:=
rgba(240,240,240,0.4)"><a href=3D"http://182.162.88.52/cgi-bin/gb2/gbrowse_=
syn/test_syn/?search_src=3Dgallus-4;name=3D4:93742817..93742820">http://182=
.162.88.52/cgi-bin/gb2/gbrowse_syn/test_syn/?search_src=3Dgallus-4;name=3D4=
:93742817..93742820</a></span><font color=3D"#000000" face=3D"sans-serif"><=
span style=3D"background-color:rgba(240,240,240,0.4)"><br>
</span></font></div><div><span style=3D"color:rgb(0,0,0);font-family:sans-s=
erif;background-color:rgba(240,240,240,0.4)"><br></span></div><div><span st=
yle=3D"color:rgb(0,0,0);font-family:sans-serif;background-color:rgba(240,24=
0,240,0.4)"><br>
</span></div><div><font color=3D"#000000" face=3D"courier new, monospace"><=
span style=3D"background-color:rgba(240,240,240,0.4)"><div># =C2=A0 =C2=A0 =
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 name =C2=A0 =C2=A0 =C2=A0 =C2=A0 =
=C2=A0conf. file =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0Description</div>=
<div>source_map =3D =C2=A0 =C2=A0 =C2=A0hg19 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =
=C2=A0hg19_synteny =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0"hg19"</div>
<div>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 gallus =
=C2=A0 =C2=A0 =C2=A0 =C2=A0gallus_synteny =C2=A0 =C2=A0 =C2=A0 =C2=A0"=
gallus-4"</div></span></font></div><div><font color=3D"#000000" face=
=3D"sans-serif"><span style=3D"background-color:rgba(240,240,240,0.4)"><br>=
</span></font></div>
</div><div class=3D"gmail_extra"><br><br><div class=3D"gmail_quote">On Tue,=
Apr 29, 2014 at 9:20 PM, Hyunmin Kim <span dir=3D"ltr"><<a href=3D"mail=
to:***@gmail.com" target=3D"_blank">***@gma=
il.com</a>></span> wrote:<br>
<blockquote class=3D"gmail_quote" style=3D"margin:0 0 0 .8ex;border-left:1p=
x #ccc solid;padding-left:1ex"><div style=3D"word-wrap:break-word">Here is =
my synteny config file.<div><br></div><div>Refer to attached file.</div><di=
v>
<br></div><div></div></div><br><div style=3D"word-wrap:break-word"><div></d=
iv><div><br></div><div>Hyunmin</div><div><br></div><div><div><div>2014. 4. =
29., =EC=98=A4=ED=9B=84 7:51, Sheldon McKay <<a href=3D"mailto:sheldon.m=
***@gmail.com" target=3D"_blank">***@gmail.com</a>> =EC=9E=91=
=EC=84=B1:</div>
<br><blockquote type=3D"cite"><div dir=3D"ltr">Hi Hyunmin,<div><br></div><d=
iv>Would you mind sharing your main configuration file (the one with someth=
ing similar to the text below) so I can try to reproduce your error?</div>
<div>
<br></div><div>Sheldon</div>
<div><br></div><div><br></div># =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =
=C2=A0 =C2=A0 name =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0conf. file =C2=A0 =C2=
=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0Description<br>source_map =3D =C2=A0 =C2=A0 =
rice =C2=A0 =C2=A0 =C2=A0 =C2=A0 rice_synteny =C2=A0 =C2=A0 =C2=A0 =C2=A0 =
=C2=A0"Domesic Rice (O. sativa)"<br>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 wild_rice =
=C2=A0 =C2=A0 wild_rice_synteny =C2=A0 =C2=A0 "Wild Rice"</div>
<div class=3D"gmail_extra"><br><br><div class=3D"gmail_quote">On Tue, Apr 2=
9, 2014 at 2:34 AM, Hyunmin Kim <span dir=3D"ltr"><<a href=3D"mailto:bra=
***@gmail.com" target=3D"_blank">***@gmail.com= </a>></span> wrote:<br>
<blockquote class=3D"gmail_quote" style=3D"margin:0 0 0 .8ex;border-left:1p=
x #ccc solid;padding-left:1ex"><div style=3D"word-wrap:break-word">Hi, All<=
div><br></div><div>I think my finding is bug on GBrowse_syn.</div><div><br>=
</div>
<div>For example, when I set the sample chromosome (scaffold or config..etc=
) name is gallus-4.</div><div>[Genome to search: ] can't be auto select=
ion.</div><div><br></div><div>Maybe it caused by naming ( involve =E2=80=9C=
-=E2=80=9C in chromosome name).</div>
<div><br></div><div>Test URL:</div><div><a href=3D"http://182.162.88.52/cgi=
-bin/gb2/gbrowse_syn/test_syn" target=3D"_blank">http://182.162.88.52/cgi-b=
in/gb2/gbrowse_syn/test_syn</a></div><div><br></div><div>Tutorial (For find=
the bug)</div>
<div>1. Browsing <a href=3D"http://182.162.88.52/cgi-bin/gb2/gbrowse_syn/te=
st_syn" target=3D"_blank">http://182.162.88.52/cgi-bin/gb2/gbrowse_syn/test=
_syn</a> on your web browser.</div><div><br></div><div>2. Click the example=
: [hg19 chr4:159567935..159567940]</div>
<div><br></div><div>3. and Click the another example: [gallus-4 4:93742817.=
.93742820]</div><div><br></div><div>and you=E2=80=99ll get the error messag=
e:</div><div><h2 style=3D"color:red;font-family:sans-serif">Species 'ga=
llus-4' is not configured for this database</h2>
<form method=3D"post" action=3D"http://182.162.88.52/cgi-bin/gb2/gbrowse_sy=
n/test_syn/?search_src=3Dgallus-4;name=3D4:93742817..93742820" enctype=3D"m=
ultipart/form-data" name=3D"145b03873f828a1a_145ac31e2ea811df_searchform" s=
tyle=3D"font-family:sans-serif;font-size:small" target=3D"_blank" onsubmit=
=3D"return window.confirm("You are submitting information to an extern=
al page.\nAre you sure?");">
</form></div><div>so, you must select the [Genome to search: ] to gallus-4<=
/div><div>and you=E2=80=99ll can show the correct result.</div><div><br></d=
iv><div><br></div><div>If you don=E2=80=99t understand my reporting, please=
reply to me.</div>
<div><br></div><div>Thanks,</div><div>Hyunmin</div></div><br>--------------=
----------------------------------------------------------------<br>
"Accelerate Dev Cycles with Automated Cross-Browser Testing - For FREE=
<br>
Instantly run your Selenium tests across 300+ browser/OS combos. =C2=A0Get<=
br>
unparalleled scalability from the best Selenium testing platform available.=
<br>
Simple to use. Nothing to install. Get started now for free."<br>
<a href=3D"http://p.sf.net/sfu/SauceLabs" target=3D"_blank">http://p.sf.net=
/sfu/SauceLabs</a><br>_______________________________________________<br>
Gmod-gbrowse mailing list<br>
<a href=3D"mailto:Gmod-***@lists.sourceforge.net" target=3D"_blank">Gmo=
d-***@lists.sourceforge.net</a><br>
<a href=3D"https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse" targe=
t=3D"_blank">https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse</a><=
br>
<br></blockquote></div><br></div>
</blockquote></div><br></div></div><br></blockquote></div><br></div>
--20cf30223d3d33f5e604f838a385--