Jie
2015-01-14 16:54:19 UTC
*Hi, all*
*I have install the lastest gbrowse in REDHAT 7. Now I can visit the YEAST
test page, but there seems many problem:*
*First, the tmp images can not be shown in the webpage. The
/var/tmp/gbrowse2/images directory do not have files wrote. I checked the
error log of httpd, seems like bellow:*
*[Mon Jan 12 15:19:19.904818 2015] [authz_core:error] [pid 49455] [client
10.21.211.40:51181 <http://10.21.211.40:51181>] AH01630: client denied by
server configuration: /var/tmp/gbrowse2/images/yeast/*
*e305da83dbecdd03d4661778eec9bae9.png, referer:
http://172.20.26.72/cgi-bin/gb2/gbrowse/yeast/?name=chrI
<http://172.20.26.72/cgi-bin/gb2/gbrowse/yeast/?name=chrI>*
*I also checked the gbrowse.conf in httpd/conf.d/, like this:*
*<Directory "/var/tmp/gbrowse2/images/">*
* Order allow,deny*
* Allow from all*
*</Directory>*
*And the directory in "/var/tmp/gbrowse2/images/"> like :*
*[***@path-hpc3 gbrowse2]$ pwd*
*/var/tmp/gbrowse2*
*[***@path-hpc3 gbrowse2]$ ls -al*
*total 4*
*drwxrwxrwx. 3 apache apache 19 Jan 12 15:16 .*
*drwxrwxrwx. 20 root root 4096 Jan 12 14:22 ..*
*drwxrwxrwx. 2 apache apache 6 Jan 12 15:18 images*
*[***@path-hpc3 gbrowse2]$ *
*File in â/var/www/html/gbrowse2â :*
*[***@path-hpc3 gbrowse2]$ pwd*
*/var/www/html/gbrowse2*
*[***@path-hpc3 gbrowse2]$ l*
*total 192K*
*-rwxrwxrwx. 1 root root 3.1K Jan 12 13:50 vbox_index.html*
*-rwxrwxrwx. 1 root root 4.5K Jan 12 13:50 index.html*
*-rwxrwxrwx. 1 root root 5.2K Jan 12 13:50 gmod_cog.jpeg*
*-rwxrwxrwx. 1 root root 7.7K Jan 12 13:50 general_help.html.zh*
*-rwxrwxrwx. 1 root root 20K Jan 12 13:50 general_help.html*
*-rwxrwxrwx. 1 root root 4.6K Jan 12 13:50 gbrowse_syn_help.html*
*-rwxrwxrwx. 1 root root 69K Jan 12 13:50 gbrowse_karyotype_help.html*
*-rwxrwxrwx. 1 root root 2.9K Jan 12 13:50 cloud_index.html*
*-rwxrwxrwx. 1 root root 42K Jan 12 13:50 annotation_help.html*
*drwxrwxrwx. 7 root root 77 Jan 12 13:50 images*
*drwxrwxrwx. 3 root root 4.0K Jan 12 13:50 css*
*drwxrwxrwx. 2 root root 4.0K Jan 12 13:50 example_scripts*
*drwxrwxrwx. 2 root root 4.0K Jan 12 13:50 js*
*drwxrwxrwx. 7 root root 4.0K Jan 12 13:50 tutorial*
*lrwxrwxrwx. 1 apache root 24 Jan 12 15:05 i -> /var/tmp/gbrowse2/images*
*[***@path-hpc3 gbrowse2]$ *
*how can I fix this problem? And it seems that my yeast database do not
work correctly, none of the click or drag options works. See attached fig.*
*Thanks*
*Jie*
*I have install the lastest gbrowse in REDHAT 7. Now I can visit the YEAST
test page, but there seems many problem:*
*First, the tmp images can not be shown in the webpage. The
/var/tmp/gbrowse2/images directory do not have files wrote. I checked the
error log of httpd, seems like bellow:*
*[Mon Jan 12 15:19:19.904818 2015] [authz_core:error] [pid 49455] [client
10.21.211.40:51181 <http://10.21.211.40:51181>] AH01630: client denied by
server configuration: /var/tmp/gbrowse2/images/yeast/*
*e305da83dbecdd03d4661778eec9bae9.png, referer:
http://172.20.26.72/cgi-bin/gb2/gbrowse/yeast/?name=chrI
<http://172.20.26.72/cgi-bin/gb2/gbrowse/yeast/?name=chrI>*
*I also checked the gbrowse.conf in httpd/conf.d/, like this:*
*<Directory "/var/tmp/gbrowse2/images/">*
* Order allow,deny*
* Allow from all*
*</Directory>*
*And the directory in "/var/tmp/gbrowse2/images/"> like :*
*[***@path-hpc3 gbrowse2]$ pwd*
*/var/tmp/gbrowse2*
*[***@path-hpc3 gbrowse2]$ ls -al*
*total 4*
*drwxrwxrwx. 3 apache apache 19 Jan 12 15:16 .*
*drwxrwxrwx. 20 root root 4096 Jan 12 14:22 ..*
*drwxrwxrwx. 2 apache apache 6 Jan 12 15:18 images*
*[***@path-hpc3 gbrowse2]$ *
*File in â/var/www/html/gbrowse2â :*
*[***@path-hpc3 gbrowse2]$ pwd*
*/var/www/html/gbrowse2*
*[***@path-hpc3 gbrowse2]$ l*
*total 192K*
*-rwxrwxrwx. 1 root root 3.1K Jan 12 13:50 vbox_index.html*
*-rwxrwxrwx. 1 root root 4.5K Jan 12 13:50 index.html*
*-rwxrwxrwx. 1 root root 5.2K Jan 12 13:50 gmod_cog.jpeg*
*-rwxrwxrwx. 1 root root 7.7K Jan 12 13:50 general_help.html.zh*
*-rwxrwxrwx. 1 root root 20K Jan 12 13:50 general_help.html*
*-rwxrwxrwx. 1 root root 4.6K Jan 12 13:50 gbrowse_syn_help.html*
*-rwxrwxrwx. 1 root root 69K Jan 12 13:50 gbrowse_karyotype_help.html*
*-rwxrwxrwx. 1 root root 2.9K Jan 12 13:50 cloud_index.html*
*-rwxrwxrwx. 1 root root 42K Jan 12 13:50 annotation_help.html*
*drwxrwxrwx. 7 root root 77 Jan 12 13:50 images*
*drwxrwxrwx. 3 root root 4.0K Jan 12 13:50 css*
*drwxrwxrwx. 2 root root 4.0K Jan 12 13:50 example_scripts*
*drwxrwxrwx. 2 root root 4.0K Jan 12 13:50 js*
*drwxrwxrwx. 7 root root 4.0K Jan 12 13:50 tutorial*
*lrwxrwxrwx. 1 apache root 24 Jan 12 15:05 i -> /var/tmp/gbrowse2/images*
*[***@path-hpc3 gbrowse2]$ *
*how can I fix this problem? And it seems that my yeast database do not
work correctly, none of the click or drag options works. See attached fig.*
*Thanks*
*Jie*