unknown
1970-01-01 00:00:00 UTC
On your web site, compare:
http://182.162.88.52/cgi-bin/gb2/gbrowse_syn/test_syn/?search_src=gallus;name=4:93742817..93742820
with
http://182.162.88.52/cgi-bin/gb2/gbrowse_syn/test_syn/?search_src=gallus-4;name=4:93742817..93742820
# name conf. file Description
source_map = hg19 hg19_synteny "hg19"
gallus gallus_synteny "gallus-4"
On Tue, Apr 29, 2014 at 9:20 PM, Hyunmin Kim
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<div dir="ltr">Hi Hyunmin,<div><br></div><div>What you are observing is an intended behavior.
http://182.162.88.52/cgi-bin/gb2/gbrowse_syn/test_syn/?search_src=gallus;name=4:93742817..93742820
with
http://182.162.88.52/cgi-bin/gb2/gbrowse_syn/test_syn/?search_src=gallus-4;name=4:93742817..93742820
# name conf. file Description
source_map = hg19 hg19_synteny "hg19"
gallus gallus_synteny "gallus-4"
On Tue, Apr 29, 2014 at 9:20 PM, Hyunmin Kim
Here is my synteny config file.
Refer to attached file.
Hyunmin
Hi Hyunmin,
Would you mind sharing your main configuration file (the one with
something similar to the text below) so I can try to reproduce your error?
Sheldon
# name conf. file Description
source_map = rice rice_synteny "Domesic Rice (O.
sativa)"
wild_rice wild_rice_synteny "Wild Rice"
On Tue, Apr 29, 2014 at 2:34 AM, Hyunmin Kim <
--20cf30223d3d33f5e604f838a385Refer to attached file.
Hyunmin
Hi Hyunmin,
Would you mind sharing your main configuration file (the one with
something similar to the text below) so I can try to reproduce your error?
Sheldon
# name conf. file Description
source_map = rice rice_synteny "Domesic Rice (O.
sativa)"
wild_rice wild_rice_synteny "Wild Rice"
On Tue, Apr 29, 2014 at 2:34 AM, Hyunmin Kim <
Hi, All
I think my finding is bug on GBrowse_syn.
For example, when I set the sample chromosome (scaffold or config..etc)
name is gallus-4.
[Genome to search: ] can't be auto selection.
Maybe it caused by naming ( involve “-“ in chromosome name).
http://182.162.88.52/cgi-bin/gb2/gbrowse_syn/test_syn
Tutorial (For find the bug)
1. Browsing http://182.162.88.52/cgi-bin/gb2/gbrowse_syn/test_syn on
your web browser.
2. Click the example: [hg19 chr4:159567935..159567940]
3. and Click the another example: [gallus-4 4:93742817..93742820]
Species 'gallus-4' is not configured for this database
so, you must select the [Genome to search: ] to gallus-4
and you’ll can show the correct result.
If you don’t understand my reporting, please reply to me.
Thanks,
Hyunmin
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I think my finding is bug on GBrowse_syn.
For example, when I set the sample chromosome (scaffold or config..etc)
name is gallus-4.
[Genome to search: ] can't be auto selection.
Maybe it caused by naming ( involve “-“ in chromosome name).
http://182.162.88.52/cgi-bin/gb2/gbrowse_syn/test_syn
Tutorial (For find the bug)
1. Browsing http://182.162.88.52/cgi-bin/gb2/gbrowse_syn/test_syn on
your web browser.
2. Click the example: [hg19 chr4:159567935..159567940]
3. and Click the another example: [gallus-4 4:93742817..93742820]
Species 'gallus-4' is not configured for this database
so, you must select the [Genome to search: ] to gallus-4
and you’ll can show the correct result.
If you don’t understand my reporting, please reply to me.
Thanks,
Hyunmin
------------------------------------------------------------------------------
"Accelerate Dev Cycles with Automated Cross-Browser Testing - For FREE
Instantly run your Selenium tests across 300+ browser/OS combos. Get
unparalleled scalability from the best Selenium testing platform
available.
Simple to use. Nothing to install. Get started now for free."
http://p.sf.net/sfu/SauceLabs
_______________________________________________
Gmod-gbrowse mailing list
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
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<div dir="ltr">Hi Hyunmin,<div><br></div><div>What you are observing is an intended behavior.